PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01633g06011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NF-X1
Protein Properties Length: 1122aa    MW: 121179 Da    PI: 8.1751
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01633g06011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.81.5e-05324341118
                  zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                               CG+H+C+++CH GpC+ C
  Peinf101Scf01633g06011.1 324 CGRHRCEQTCHVGPCGHC 341
                               ****************99 PP

2zf-NF-X117.31.1e-05446463118
                  zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                               CG H Cq+ CH+G+C pC
  Peinf101Scf01633g06011.1 446 CGVHHCQAVCHTGDCAPC 463
                               ****************** PP

3zf-NF-X118.64.1e-06542560119
                  zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                               CG+H+C++lCH G CppC 
  Peinf101Scf01633g06011.1 542 CGQHSCESLCHSGHCPPCL 560
                               ******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578507.68E-8145216No hitNo description
PROSITE profilePS500168.76154215IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.48157213IPR001841Zinc finger, RING-type
PROSITE patternPS013590157212IPR019786Zinc finger, PHD-type, conserved site
CDDcd060088.53E-6246307No hitNo description
SMARTSM004380.17269287IPR000967Zinc finger, NF-X1-type
PfamPF014225.5271286IPR000967Zinc finger, NF-X1-type
CDDcd060089.09E-12314362No hitNo description
PfamPF014228.5E-4324341IPR000967Zinc finger, NF-X1-type
SMARTSM004380.03324343IPR000967Zinc finger, NF-X1-type
CDDcd060088.04E-8378431No hitNo description
PfamPF014220.01388405IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0028388407IPR000967Zinc finger, NF-X1-type
CDDcd060084.36E-13436484No hitNo description
PfamPF014221.4E-4446463IPR000967Zinc finger, NF-X1-type
SMARTSM004386.6E-4446465IPR000967Zinc finger, NF-X1-type
PfamPF0142219504515IPR000967Zinc finger, NF-X1-type
SMARTSM00438200504538IPR000967Zinc finger, NF-X1-type
CDDcd060084.89E-9532584No hitNo description
PfamPF014221.0E-4542559IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4542561IPR000967Zinc finger, NF-X1-type
SMARTSM004380.34599617IPR000967Zinc finger, NF-X1-type
PfamPF014229.5E-4652667IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16652682IPR000967Zinc finger, NF-X1-type
CDDcd060087.45E-5680729No hitNo description
PfamPF014224.5684710IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021691712IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3303.4E-4933977IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1122 aa     Download sequence    Send to blast
MSFSGQNNRR NNNTNNHRPR NNNNPVWVPR GSSTAAPTTT TTVSPAPVAT VTGTVVVSPR  60
FGHNGSSSAG NGGNKDNVSV APVSRHQTYA EFKQNRVPYG NQRRERGRGR ENYNYQENKG  120
ERVVNQGESR RLKEKDSNLP QLVQEIQEKL LKGNIECMIC YDMVRRSAPV WSCSSCYSIF  180
HLNCIKKWAR APTSVDTSLE KNQGFNWRCP GCQSVQLTSS KEIRYACFCG KRQDPPSDLY  240
LTPHSCGEPC GKKLEKELPG HGLSEEDLCP HMCVLQCHPG PCPPCKAFAP TRSCPCGKEV  300
ITTRCSDRKS VLTCGQQCGK LLDCGRHRCE QTCHVGPCGH CEIIVNAYCF CKKKTEAVLC  360
GDMGVKGDIK MEDGVFSCNS ACGNRLSCGN HVCHEICHPG PCGDCALLPS KVKTCCCGKT  420
SLAEKRHSCL DPIPTCSKTC GKSLRCGVHH CQAVCHTGDC APCLVPVTQR CRCGSTSRTV  480
ECYRTQAEDD KFTCDRPCGQ KKNCGRHRCS ERCCPLSNPK NSITGGWNPH FCSMPCEKKL  540
RCGQHSCESL CHSGHCPPCL ETIFTDLTCA CGRTSIPPPL PCGTPHPSCQ LPCSVSQPCG  600
HPPTHSCHFG DCLPCAVPIA KECVGGHVVL RNIPCGSKDI RCNKLCGKTR QCGLHACART  660
CHPSPCDISA GPSNGSRASC GQTCGAPRRD CRHTCTALCH PSSPCPDVRC EFPVTITCSC  720
GRITANVPCD AGGQIIDSVF EASIIQKLPS SLQPIETNGK KVPLGQRKLI CDDECAKMEK  780
KKVLSDAFGI TTPNLEALHF GENAAVSEVL GDLLRRDPKW VLSIEERCKY LVLGRSRGGV  840
SALKVHVFCP MLKEKRDAVR LIAARWKLSV NAAGWEPKRF VVVHVTPKSK APVRVLGAKG  900
CTISNIAQPA VFDSLVDMDP RLVVALFDLP RDGDISALVL RFGGECELVW LNDKNALAVF  960
SDPARAATAM RRLDQGSAYY GAAVVPQSGV ASAVSSTSNV WGVSGATKDG GGASALKSNP  1020
WKKAVVQEPH LRENPWDAEE WSKNPTDSAP SAGKGNEGPV ASSSNRWSIL ESGMTSDLSK  1080
ASSTVKEPAI EPVGGSVLPP KPQEVGVDEM ADVVDDWENA CD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622484.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLM1B4730.0M1B473_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000367740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1